I took a quick stab at it, and there will be some issues, but this may get you on a decent path... I am going to assume you've installed
ImagemagickFirst, I would do a garbage matte. That is, I would crop out all of the extraneous stuff in the image you don't care about. I would personally look at the image that has the biggest crop to get all of the plants in it, and use that. Open the image in GIMP, and do a rectangle select to get the dimensions:
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Look carefully at the area outlined in red, as this will give you your crop + offset parameters.
In your directory of images, create a temporary output directory, CROP. Then run this imagemagick command to crop all of your images:
mogrify -path CROP/ -crop 1211x741+407+378 +repage *.jpg
This will give you an entire sub-directory (CROP/) of pre-cropped images. Check those images to make sure that you don't need to adjust the crop parameters. If you do, you can just delete all the images in the sub-directory and re-run the command with new, adjusted parameters.
That step should at least be a little helpful no matter what final path you choose to key the images.
The next option worked semi-ok for me, but could probably have been better. I basically used this imagemagick command line to fuzz a color into transparency (if you
don't need to retain filenames, you can use this command):
convert *.jpg -alpha set -channel RGBA -fill none -fuzz 20% -opaque "#HEXCODEOFBGCOLOR" %05d.png
Obviously, replace the HEXCODEOFBGCOLOR with the correct hex code of your background (I think I used #63bdf9 from your image).
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Adjust the fuzz parameter as needed to get a good result. It's a balancing act, but it's the fastest way to churn through 2400 images.
Another option I just thought about, if you're more comfortable approaching this as a chroma-keying exercise is to load up all of your images as as sequence in Blender, and use Blenders nodes to pull the key. There is already a keying and chroma-key node built into Blender to do this automatically, and you can simply have it output the results as png files as well.
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