I can confirm that I don't get that message when running GIMP from the terminal.
I assume you've installed libnoise from koji (see link in other thread), as well as libpng12 from the Fedora 19 repositories?
I believe the message you're seeing occurs when you build a package against GTK2 in a GTK3 environment. Perhaps that problem was introduced when you manually built and installed mathmap.
Is this the same error you received when you manually compiled and installed mathmap?
If so, I suppose you might still have some bits left over from the failed build and I'm not sure what to suggest that will allow you back out of that. Maybe someone else here might know.
If you completely remove mathmap and run GIMP from the terminal, do you still get the error?
Perhaps a clean test install of F19, and installing the packages as I outlined, will tell you for sure if something you've done previously is responsible for the error. Other than that, I don't know what else to recommend.
Just mapped this flower to a sphere using mathmap in F19.

On a side note, I'm using Fedora 19 /w MATE desktop.